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Gimme five: MER approach uncover new proteins for breast cancer. Markers or targets?

Although breast cancer is the most prevalent type of cancer affecting women across the world and is associated with substantial morbidity and a significant mortality rate, extensive research involving exome and genome-wide genetic association (GWAS) studies has discovered close to 300 genetic loci that can predict susceptibility to breast cancer. However, the role of specific variants of these genes and the mechanisms through which these loci influence the susceptibility to breast cancer remain unclear. Compared to GWAS, a Mendelian randomization (MER) approach provides an alternative method of understanding and mapping pathways that are etiologically important in the risk and development of cancer. It examines genetic variants to determine the causal relationship between cancer and its modifiable.

Additionally, circulating proteins in the plasma that can be precisely measured using high-throughput methods are indicators of biological processes associated with cancer and can be explored to identify potential biomarkers with etiological roles in cancer pathogenesis. In a recent study published in the journal Nature Communications, researchers used a Mendelian randomization approach to conduct a genetic association analysis of the levels of over 3,000 proteins to identify biomarkers for early breast cancer detection. In the present study, the researchers evaluated the levels of close to 3000 proteins from plasma samples of women registered in the Karolinska Mammography Project. The sample set consisted of 299 women who had been diagnosed with breast cancer within two years of having provided blood samples for the study and an equal number of random controls.

Measurements of protein levels were used for a genetic association analysis to identify cis-acting protein quantitative trait loci, which were then used as instrumental variables in the Mendelian randomization analysis. The Mendelian randomization analysis to determine the risk of breast cancer was carried out through a case-controlled meta-analysis of the Breast Cancer Association Consortium, and the findings were then replicated using a second case-controlled meta-analysis of breast cancer risk using the UK Biobank and FinnGen from Finland. While there were no significant differences in factors such as body mass index (BMI) or receipt of hormone replacement therapy (HRT), the number of women who were smokers or who had a family history of breast cancer was higher among the cases.

Significant proteins identified through these Mendelian randomization analyses were visualized and evaluated for genetic associations for breast cancer and colocalization of the proteins. Furthermore, potential etiological relationships between these proteins and emerging and existing risk factors for breast cancer were also examined using the Mendelian randomization approach. The results reported that five proteins were to play a potentially etiological role in the risk of breast cancer, which had been confirmed through analyses of the independent cohorts. These five proteins were Toll-like receptor 1 (TLR1), layilin (LAYN), 2’-deoxynucleoside 5’-phosphate N-hydrolase 1 (DNPH1), leucine-rich protein LRRC37A2 and the CD160 antigen. Genetically higher levels of TLR-1, DNPH1, and LAYN and lower levels of LRRC37A2 and CD160 were found to correlate with an increase in breast cancer risk.

Higher LRRC37A2 levels were also linked to age at the onset of menstruation, providing evidence for its role in the risk of breast cancer. Additionally, the enzyme encoded by the DNPH1 gene is involved in nucleotide metabolism and is also targeted by the transcription factor ETV1 that is expressed in breast cancer tumors. CD160 is a receptor expressed in most immune cells, such as natural killer cells (NK cells), and is linked to cytokine production. Studies involving patients with hepatocellular carcinoma have shown impaired NK cell functions associated with lower levels of CD160 expression. Additionally, Layilin, encoded by LAYN, is a membrane receptor for hyaluronic acid and a talin-binding protein that has an essential role in cell motility and adhesion. Beside, elevated levels of hyaluronic acid are known in the microenvironment of various types of cancers, including breast cancer.

Therefore, higher expression levels of TLR-1, DNPH1 and LAYN and lower expression of LRRC37A2 and CD160 could be associated with an increase in breast cancer risk. Further research is required to examine whether these biomarkers could be potential drug targets as well.

  • Edited by Dr. Gianfrancesco Cormaci, PhD, specialist in Clinical Biochemistry.

Scientific references

Mälarstig A et al. Nat Commun 2023; 14:7680.

Romualdo CS et al. Brit J Cancer 2022; 126:981.

Chen F et al. Int. J. Cancer 2022; 151:372–380.

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Dott. Gianfrancesco Cormaci
Dott. Gianfrancesco Cormaci
Laurea in Medicina e Chirurgia nel 1998, specialista in Biochimica Clinica dal 2002, ha conseguito dottorato in Neurobiologia nel 2006. Ex-ricercatore, ha trascorso 5 anni negli USA alle dipendenze dell' NIH/NIDA e poi della Johns Hopkins University. Guardia medica presso la casa di Cura Sant'Agata a Catania. In libera professione, si occupa di Medicina Preventiva personalizzata e intolleranze alimentari. Detentore di un brevetto per la fabbricazione di sfarinati gluten-free a partire da regolare farina di grano. Responsabile della sezione R&D della CoFood s.r.l. per la ricerca e sviluppo di nuovi prodotti alimentari, inclusi quelli a fini medici speciali.

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